How to?
GOSim Help


Example for GO Term Multiple :

GO:0004702 GO:0034084
GO:0000031 GO:0000033
GO:0000034 GO:0000036
GO:0000048 GO:0000049

Example GO Term File Upload : gotermpairs.txt

Method for measuring GO similarity :
GO Term Single Input (e.g. 1st=GO:0000026 2nd=GO:0000033 )
GO Term Multiple (a GO pair per a line(SINGLE SPACE-delimited))
GO Term File Upload (Tab-Delimited)


1st GO term: , 2nd GO term:
For Jiang's Method Only (input ignored for other methods):
alpha (0~1): , beta (0~1): , is_a (0~1): , part_of (0~1):
List of GO pairs :


How to?
GPSim Help


Example for Text Input :

GP contents GP pairs
>GP1
GO:0000006
GO:0000007
>GP2
GO:0000009
GO:0000010
GO:0000007
>GP3
GO:0000031
GO:0000026
GP1 GP2
GP1 GP3
GP2 GP3

*** NOTICE ***
The name of Gene Products should be start with " > "

Example for File Input :

GP contents: gps.txt
GP pairs: gppairs.txt
Method for measuring similarity between groups :
Method for measuring similarity between GO pairs :
File Input
Text Input (SPACE-delimited)


GP Content:
GP Pairs:
Contents of Gene Products:

List of Gene Products to be measured:(SINGLE SPACE-delimited)

For Jiang's Method Only (input ignored for other methods):
alpha (0~1): , beta (0~1): , is_a (0~1): , part_of (0~1):



Number of GO Term pairs shared by root node (i.e. GO:0003674)



Enter a GO term (e.g. GO:0004702) to find partners sharing the root node:

How to?
GP contents


Example for GP Content :

Using UniProt ID Using Gene Name
P36954
P06903
P06020
arr
bglG
bglS
bglY
brnQ
crtI

Example for File Input :

Using UniProt ID: uniprotid.txt
Using Gene Name : genelist.txt

Using UniProt ID

Type of data input:
File Upload
Text Input (NEWLINE-delimited)


Filter by species :
Gene Product ID:


Using Gene Name

Type of data input:
File Upload
Text Input (NEWLINE-delimited)


Filter by species :
Gene Product ID: