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Software,
Codes, and Websites 6. HMM
Method for Uncovering Genes in the Same pathways
A
Hidden Markov Model (HMM) based algorithm for detecting groups of genes
functionally similar to a set of input genes from microarray expression data.
(Paper Software and Data) 5. DDINet: Network of Interacting Protein Domains
4. Binding: software for protein binding site prediction
3. CSIDOP: software for protein function assignment
CSIDOP is a new method for protein function assignment based on
the shared interacting domain patterns extracted from cross-species protein-protein
interaction (PPI) data. (Paper Software and Data) 2. RFPPI: random forest based PPI
prediction RFPPI
is a random forest-based approach for protein-protein interaction prediction
using domain information. (Paper Software and
Data) 1. DataKernel: Matlab codes for
data-dependent kernel We
developed a data-dependent kernel for microarray data analysis
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